套件：cufflinks（2.2.1+dfsg.1-8 以及其他的） [non-free]

[ 原始碼： cufflinks  ]

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::c++, 角色: 程式, 處理: Biological Sequence

其他與 cufflinks 有關的套件

• dep: libboost-serialization1.74.0 (>= 1.74.0)

  serialization library for C++

• dep: libboost-thread1.74.0 (>= 1.74.0)

  portable C++ multi-threading

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 4.0)

  GCC 支援函式庫

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.3.3)

  壓縮函式庫 - 跑程式時用(runtime)

• rec: gffread

  GFF/GTF format conversions, region filtering, FASTA sequence extraction

• enh: tophat

  套件暫時不可用

下載 cufflinks

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	2.2.1+dfsg.1-8+b1	1，500。5 kB	10，384。0 kB	[檔案列表]