套件：soapsnp（1.03-5）

[ 原始碼： soapsnp  ]

resequencing utility that can assemble consensus sequence of genomes

For getting ideas on the cause of diseases or their response to therapy, and for understanding either for a particular patient, doctors around the globe are starting to look at the genes or the whole genome and how that sequence is different from a healthy / well responding individual.

SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis Package). The program is a resequencing utility. It assembles the consensus sequence for the genome of a newly sequenced individual based on the alignment of the raw sequencing reads on a known reference. SNPs can then be identified on the consensus sequence through the comparison with the reference.

SOAPsnp uses a method based on Bayes' theorem (the reverse probability model) to call consensus genotype by carefully considering the data quality, alignment, and recurring experimental errors. All these kinds of information was integrated into a single quality score for each base in PHRED scale to measure the accuracy of consensus calling. Currently, it supports the alignment format of SOAPaligner (soap2).

其他與 soapsnp 有關的套件

• dep: libc6 (>= 2.34)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386, mipsel]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• sug: genomics.cn-soapsnp

  套件暫時不可用

下載 soapsnp

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	48。6 kB	118。0 kB	[檔案列表]
arm64	43。5 kB	146。0 kB	[檔案列表]
armel	41。2 kB	97。0 kB	[檔案列表]
armhf	40。3 kB	77。0 kB	[檔案列表]
i386	48。6 kB	117。0 kB	[檔案列表]
mips64el	49。3 kB	149。0 kB	[檔案列表]
mipsel	49。6 kB	147。0 kB	[檔案列表]
ppc64el	52。4 kB	146。0 kB	[檔案列表]
s390x	46。8 kB	122。0 kB	[檔案列表]