Balík: soapsnp (1.03-5)

[ Zdroj: soapsnp  ]

resequencing utility that can assemble consensus sequence of genomes

For getting ideas on the cause of diseases or their response to therapy, and for understanding either for a particular patient, doctors around the globe are starting to look at the genes or the whole genome and how that sequence is different from a healthy / well responding individual.

SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis Package). The program is a resequencing utility. It assembles the consensus sequence for the genome of a newly sequenced individual based on the alignment of the raw sequencing reads on a known reference. SNPs can then be identified on the consensus sequence through the comparison with the reference.

SOAPsnp uses a method based on Bayes' theorem (the reverse probability model) to call consensus genotype by carefully considering the data quality, alignment, and recurring experimental errors. All these kinds of information was integrated into a single quality score for each base in PHRED scale to measure the accuracy of consensus calling. Currently, it supports the alignment format of SOAPaligner (soap2).

Ostatné balíky súvisiace s balíkom soapsnp

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0) [nie armel, armhf, i386, mipsel]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• sug: genomics.cn-soapsnp

  Balík nie je dostupný

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	48.6 kB	118.0 kB	[zoznam súborov]
arm64	43.5 kB	146.0 kB	[zoznam súborov]
armel	41.2 kB	97.0 kB	[zoznam súborov]
armhf	40.3 kB	77.0 kB	[zoznam súborov]
i386	48.6 kB	117.0 kB	[zoznam súborov]
mips64el	49.3 kB	149.0 kB	[zoznam súborov]
mipsel	49.6 kB	147.0 kB	[zoznam súborov]
ppc64el	52.4 kB	146.0 kB	[zoznam súborov]
s390x	46.8 kB	122.0 kB	[zoznam súborov]