套件：sga（0.10.15-7 以及其他的）

[ 原始碼： sga  ]

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

其他與 sga 有關的套件

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-ruffus

  Python3 computation pipeline library widely used in bioinformatics

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  壓縮函式庫 - 跑程式時用(runtime)

• rec: abyss

  de novo, parallel, sequence assembler for short reads

下載 sga

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	0.10.15-7+b1	812。5 kB	2，432。0 kB	[檔案列表]
arm64	0.10.15-7+b1	580。5 kB	1，792。0 kB	[檔案列表]
armel	0.10.15-7+b1	564。3 kB	1，727。0 kB	[檔案列表]
armhf	0.10.15-7+b1	582。9 kB	1，279。0 kB	[檔案列表]
i386	0.10.15-7+b1	876。3 kB	2，607。0 kB	[檔案列表]
mips64el	0.10.15-7+b1	745。3 kB	3，062。0 kB	[檔案列表]
mipsel	0.10.15-7+b1	773。8 kB	2，910。0 kB	[檔案列表]
ppc64el	0.10.15-7+b1	692。6 kB	2，304。0 kB	[檔案列表]