Package: sga (0.10.15-7 and others)

[ Source: sga  ]

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Other Packages Related to sga

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34)

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-ruffus

  Python3 computation pipeline library widely used in bioinformatics

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  tömörítő könyvtár - futásidejű

• rec: abyss

  de novo, parallel, sequence assembler for short reads

Download sga

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	0.10.15-7+b1	812.5 kB	2,432.0 kB	[list of files]
arm64	0.10.15-7+b1	580.5 kB	1,792.0 kB	[list of files]
armel	0.10.15-7+b1	564.3 kB	1,727.0 kB	[list of files]
armhf	0.10.15-7+b1	582.9 kB	1,279.0 kB	[list of files]
i386	0.10.15-7+b1	876.3 kB	2,607.0 kB	[list of files]
mips64el	0.10.15-7+b1	745.3 kB	3,062.0 kB	[list of files]
mipsel	0.10.15-7+b1	773.8 kB	2,910.0 kB	[list of files]
ppc64el	0.10.15-7+b1	692.6 kB	2,304.0 kB	[list of files]