[ 原始碼： mash ]
套件：mash（2.3+dfsg-3 以及其他的）
fast genome and metagenome distance estimation using MinHash
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to a representative sketch and rapidly estimate pairwise distances between genomes or metagenomes. Mash sketch databases effectively delineate known species boundaries, allow construction of approximate phylogenies, and can be searched in seconds using assembled genomes or raw sequencing runs from Illumina, Pacific Biosciences, and Oxford Nanopore. For metagenomics, Mash scales to thousands of samples and can replicate Human Microbiome Project and Global Ocean Survey results in a fraction of the time.
其他與 mash 有關的套件
|
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
-
- dep: libcapnp-0.9.2
- Cap'n Proto C++ library
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
-
- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
-
- dep: libmurmurhash2 (>= 0.2)
- Portable MurmurHash Implementation
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)