套件：maffilter（1.3.1+dfsg-4）

[ 原始碼： maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

其他與 maffilter 有關的套件

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams Library

• dep: libbpp-core4 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl-omics3 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12 (>= 2.4.1)

  Bio++ Phylogenetic library

• dep: libbpp-seq-omics3 (>= 2.4.1)

  Bio++ Sequence library: genomics components

• dep: libbpp-seq12 (>= 2.4.1)

  Bio++ Sequence library

• dep: libc6 (>= 2.34)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

下載 maffilter

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	254。0 kB	1，312。0 kB	[檔案列表]
arm64	233。3 kB	1，304。0 kB	[檔案列表]
armel	215。3 kB	1，175。0 kB	[檔案列表]
armhf	221。0 kB	1，047。0 kB	[檔案列表]
i386	260。8 kB	1，291。0 kB	[檔案列表]
mips64el	219。1 kB	1，488。0 kB	[檔案列表]
mipsel	220。3 kB	1，413。0 kB	[檔案列表]
ppc64el	252。9 kB	1，432。0 kB	[檔案列表]
s390x	231。5 kB	1，324。0 kB	[檔案列表]