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[ 原始碼: reapr  ]

套件:reapr(1.0.18+dfsg-5 以及其他的)

reapr 的相關連結

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Debian 的資源:

下載原始碼套件 reapr

維護小組:

外部的資源:

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universal tool for genome assembly evaluation

REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual inspection. It reports mis-assemblies and other warnings, and produces a new broken assembly based on the error calls.

The software requires as input an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size distribution is analysed to locate mis-assemblies. REAPR works best using mapped read pairs from a large insert library (at least 1000bp). Additionally, if a short insert Illumina library is also available, REAPR can combine this with the large insert library in order to score each base of the assembly.

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::c++, 使用者介面: 命令行, 角色: role::program, works-with::biological-sequence

其他與 reapr 有關的套件

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下載 reapr

下載可用於所有硬體架構的
硬體架構 版本 套件大小 安裝後大小 檔案
i386 1.0.18+dfsg-5+b1 212。9 kB1,048。0 kB [檔案列表]