套件：glam2（1064-9）

[ 原始碼： glam2  ]

gapped protein motifs from unaligned sequences

GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs.

This package includes programs for discovering motifs shared by a set of sequences and finding matches to these motifs in a sequence database, as well as utilities for converting glam2 motifs to standard alignment formats, masking glam2 motifs out of sequences so that weaker motifs can be found, and removing highly similar members of a set of sequences.

The package includes these programs:

 glam2:       discovering motifs shared by a set of sequences;
 glam2scan:   finding matches, in a sequence database, to a motif discovered
              by glam2;
 glam2format: converting glam2 motifs to  standard alignment formats;
 glam2mask:   masking glam2 motifs out of sequences, so that weaker motifs
              can be found;
 glam2-purge: removing highly similar members of a set of sequences.

In this binary package, the fast Fourier algorithm (FFT) was enabled for the glam2 program.

標籤: 領域: 生物學, 生物資訊學, 實做語言: implemented-in::c, interface::commandline, 角色: 程式, 範圍: 實用程式, Purpose: use::analysing, use::comparing, 搜尋, 支援的格式: works-with-format::TODO, works-with-format::plaintext, 處理: 需要一個額外的標籤

其他與 glam2 有關的套件

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libfftw3-double3 (>= 3.3.5)

  Library for computing Fast Fourier Transforms - Double precision

下載 glam2

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	230。0 kB	507。0 kB	[檔案列表]
arm64	222。7 kB	491。0 kB	[檔案列表]
armel	216。8 kB	474。0 kB	[檔案列表]
armhf	214。4 kB	402。0 kB	[檔案列表]
i386	233。3 kB	518。0 kB	[檔案列表]
mips64el	227。4 kB	543。0 kB	[檔案列表]
mipsel	226。3 kB	513。0 kB	[檔案列表]
ppc64el	242。6 kB	763。0 kB	[檔案列表]
s390x	226。3 kB	515。0 kB	[檔案列表]