软件包：tree-ppuzzle（5.3~rc16+dfsg-12 以及其他的）

[ 源代码： tree-puzzle  ]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

标签: 领域: 生物学, 生物信息学, 实做语言: implemented-in::c, interface::commandline, 角色: 程序, 范围: 实用程序, Purpose: use::analysing, use::comparing, 支持的格式: 纯文本, 处理: 需要一个额外的标签

其他与 tree-ppuzzle 有关的软件包

• dep: libc6 (>= 2.34)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libmpich12 [armel, armhf, i386]

  Shared libraries for MPICH

• dep: libopenmpi40 (>= 5.0.6) [除 armel, armhf, i386]

  high performance message passing library -- shared library

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• dep: mpi-default-bin

  Standard MPI runtime programs (metapackage)

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

  package of programs for inferring phylogenies

• sug: treetool

  软件包暂时不可用

下载 tree-ppuzzle

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	5.3~rc16+dfsg-12+b1	183.4 kB	441.0 kB	[文件列表]
arm64	5.3~rc16+dfsg-12+b1	167.8 kB	429.0 kB	[文件列表]
armel	5.3~rc16+dfsg-12	176.1 kB	451.0 kB	[文件列表]
armhf	5.3~rc16+dfsg-12	167.1 kB	331.0 kB	[文件列表]
i386	5.3~rc16+dfsg-12	196.1 kB	539.0 kB	[文件列表]
mips64el	5.3~rc16+dfsg-12+b1	185.6 kB	575.0 kB	[文件列表]
ppc64el	5.3~rc16+dfsg-12+b1	193.8 kB	557.0 kB	[文件列表]
riscv64	5.3~rc16+dfsg-12+b1	186.8 kB	385.0 kB	[文件列表]
s390x	5.3~rc16+dfsg-12+b1	196.9 kB	492.0 kB	[文件列表]