Balík: tree-ppuzzle (5.3~rc16+dfsg-12 a iné)

[ Zdroj: tree-puzzle  ]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Značky: Pole: Biológia, Bioinformatika, Implementované v: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Ostatné balíky súvisiace s balíkom tree-ppuzzle

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libmpich12 [armel, armhf, i386]

  Shared libraries for MPICH

• dep: libopenmpi40 (>= 5.0.6) [nie armel, armhf, i386]

  knižnica na vyskokovýkonné odovzdávanie správ - zdieľaná knižnica

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• dep: mpi-default-bin

  štandardné dynamické programy MPI - metabalík

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

  package of programs for inferring phylogenies

• sug: treetool

  Balík nie je dostupný

Stiahnuť tree-ppuzzle

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	5.3~rc16+dfsg-12+b1	183.4 kB	441.0 kB	[zoznam súborov]
arm64	5.3~rc16+dfsg-12+b1	167.8 kB	429.0 kB	[zoznam súborov]
armel	5.3~rc16+dfsg-12	176.1 kB	451.0 kB	[zoznam súborov]
armhf	5.3~rc16+dfsg-12	167.1 kB	331.0 kB	[zoznam súborov]
i386	5.3~rc16+dfsg-12	196.1 kB	539.0 kB	[zoznam súborov]
mips64el	5.3~rc16+dfsg-12+b1	185.6 kB	575.0 kB	[zoznam súborov]
ppc64el	5.3~rc16+dfsg-12+b1	193.8 kB	557.0 kB	[zoznam súborov]
riscv64	5.3~rc16+dfsg-12+b1	186.8 kB	385.0 kB	[zoznam súborov]
s390x	5.3~rc16+dfsg-12+b1	196.9 kB	492.0 kB	[zoznam súborov]