软件包：seer（1.1.4-8）

[ 源代码： seer  ]

genomic sequence element (kmer) enrichment analysis

Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics.

其他与 seer 有关的软件包

• dep: libarmadillo14 (>= 1:14.0.1+dfsg)

  streamlined C++ linear algebra library

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  或者 libblas.so.3

  本虚包由这些包填实： libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libc6 (>= 2.38)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, ppc64el, s390x]

  GCC 支持库

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhdf5-103-1t64

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 14)

  GNU 标准 C++ 库，第3版

• dep: libtext-csv-perl

  comma-separated values manipulator (using XS or PurePerl)

• dep: zlib1g (>= 1:1.1.4)

  压缩库 - 运行时

• sug: fsm-lite

  frequency-based string mining (lite)

下载 seer

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	1,200.9 kB	5,071.0 kB	[文件列表]
arm64	1,136.8 kB	5,027.0 kB	[文件列表]
armel	1,128.8 kB	4,850.0 kB	[文件列表]
armhf	1,115.0 kB	4,298.0 kB	[文件列表]
i386	1,193.3 kB	4,998.0 kB	[文件列表]
mips64el	1,187.5 kB	5,559.0 kB	[文件列表]
ppc64el	1,172.2 kB	5,347.0 kB	[文件列表]
riscv64	1,178.8 kB	4,499.0 kB	[文件列表]
s390x	1,194.1 kB	5,111.0 kB	[文件列表]