软件包：minia（3.2.6-4 以及其他的）
minia 的相关链接
Debian 的资源：
下载源码包 minia：
维护小组：
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Olivier Sallou (QA 页面)
- Andreas Tille (QA 页面)
- Steffen Moeller (QA 页面)
外部的资源：
- 主页 [minia.genouest.org]
相似软件包：
short-read biological sequence assembler
What was referred to as "next-generation" DNA sequencing up to the year 2020 delivered only "short" reads up to ~600 base pairs in length that would then have to be puzzled by random overlaps in their sequence towards a complete genome. This is the genome assembly. And there are many biological pitfalls on long stretches of low complexity regions and copy number variations and other sorts of redundancies that render this difficult.
This package provides a short-read DNA sequence assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.
The output of Minia is a set of contigs, i.e. stretches of gap-free linear overlaps of short reads. In the best possible case this is a whole chromosome.
Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).
其他与 minia 有关的软件包
|
|
|
|
-
- dep: bc
- GNU bc 任意精度的计算语言
-
- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgatbcore3 (>= 1.4.2) [amd64]
- dynamic library of the Genome Analysis Toolbox
- dep: libgatbcore3 (>= 1.4.2+dfsg) [除 amd64]
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
-
- dep: libhdf5-103-1t64
- HDF5 C runtime files - serial version
-
- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
-
- dep: zlib1g
- 压缩库 - 运行时
-
- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
-
- sug: bandage
- Bioinformatics Application for Navigating De novo Assembly Graphs Easily