[ 源代码： snpeff ]
软件包：libsnpeff-java（5.2.e+dfsg-1）
genetic variant annotation and effect prediction toolbox - lib
SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).
The inputs are predicted variants (SNPs, insertions, deletions and MNPs). The input file is usually obtained as a result of a sequencing experiment, and it is usually in variant call format (VCF).
SnpEff analyzes the input variants. It annotates the variants and calculates the effects they produce on known genes (e.g. amino acid changes).
This package contains the library.
其他与 libsnpeff-java 有关的软件包
|
|
|
|
-
- dep: junit5
- JUnit regression test framework for Java
-
- dep: libapfloat-java (>= 1.13.0)
- high performance arbitrary precision arithmetic library for Java
-
- dep: libbiojava6-java
- Java API to biological data and applications (version 6)
-
- dep: libcharts4j-java (>= 1.3)
- free, lightweight charts and graphs Java API
-
- dep: libcommons-cli-java (>= 1.6.0)
- Command line arguments and options parsing library
-
- dep: libcommons-codec-java (>= 1.16.0)
- encoder and decoders such as Base64 and hexadecimal codec
-
- dep: libcommons-io-java (>= 2.16.1)
- Common useful IO related classes
-
- dep: libcommons-math3-java (>= 3.6.1)
- Java lightweight mathematics and statistics components
-
- dep: libdistlib-java (>= 1.0)
- Java library of statistical distribution functions
-
- dep: libfreemarker-java
- template engine written in Java
-
- dep: libhtsjdk-java
- Java API for high-throughput sequencing data (HTS) formats
-
- dep: libtrove3-java
- high performance collections for java
-
- sug: libsnpeff-java-doc
- Documentation for Snp Effect