[ 源代码： nanopolish ]
软件包：nanopolish（0.14.0-1 以及其他的）
consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.
其他与 nanopolish 有关的软件包
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- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC 支持库
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- dep: libgomp1 (>= 6)
- GCC OpenMP（GOMP）支持库
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- dep: libhdf5-103-1t64
- HDF5 C runtime files - serial version
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libslow5-0t64 (>= 0.5.1)
- library for reading & writing SLOW5 files
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: libstreamvbyte0 (>= 0.4.1)
- fast integer compression in C using the StreamVByte codec
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- dep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)