软件包：iva（1.0.11+ds-5）

[ 源代码： iva  ]

iterative virus sequence assembler

IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth.

IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence.

标签: 生物学: 核酸, 领域: 生物学, field::biology:bioinformatics, implemented-in::python, 用户接口: 命令行, 角色: role::program, works-with::biological-sequence, 处理: 文件

其他与 iva 有关的软件包

• dep: default-jre-headless

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• dep: fastaq

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• dep: kmc

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• dep: mummer

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• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx

  tool to create, manipulate and study complex networks (Python3)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-packaging

  core utilities for python3 packages

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: smalt

  Sequence Mapping and Alignment Tool

• rec: bioperl

  用于处理计算分子生物学的 Perl 工具

• rec: r-base-core

  GNU R core of statistical computation and graphics system

• rec: trimmomatic

  flexible read trimming tool for Illumina NGS data

下载 iva

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
i386	8,380.5 kB	8,770.0 kB	[文件列表]