Balík: iva (1.0.11+ds-5)

[ Zdroj: iva  ]

iterative virus sequence assembler

IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth.

IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence.

Značky: Biológia: Nucleic Acids, Pole: Biológia, field::biology:bioinformatics, implemented-in::python, User Interface: Príkazový riadok, Role: role::program, works-with::biological-sequence, Works with: Súbory

Ostatné balíky súvisiace s balíkom iva

• dep: default-jre-headless

  Standard Java or Java compatible Runtime (headless)

• dep: fastaq

  FASTA and FASTQ file manipulation tools

• dep: kmc

  count kmers in genomic sequences

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: perl

  Practical Extraction and Report Language od Larryho Walla

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx

  nástroj na tvorbu, manipuláciu a študovanie komplexných sietí - Python 3

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-packaging

  základné nástroje balíkov jazyka Python 3

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: smalt

  Sequence Mapping and Alignment Tool

• rec: bioperl

  nástroje jazyka Perl na výpočtovú molekulárnu biológiu

• rec: r-base-core

  jadro GNU R na štatistické výpočty a grafický systém

• rec: trimmomatic

  flexible read trimming tool for Illumina NGS data

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Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
i386	8,380.5 kB	8,770.0 kB	[zoznam súborov]