软件包：hhsuite（3.3.0+ds-8 以及其他的）

[ 源代码： hhsuite  ]

sensitive protein sequence searching based on HMM-HMM alignment

HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).

This package contains HHsearch and HHblits among other programs and utilities.

HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling.

HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments.

其他与 hhsuite 有关的软件包

• dep: hhsuite-data (= 3.3.0+ds-8)

  sensitive protein sequence searching based on HMM-HMM alignment (data)

• dep: libc6 (>= 2.38)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP（GOMP）支持库

• dep: libstdc++6 (>= 14)

  GNU 标准 C++ 库，第3版

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

下载 hhsuite

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	3.3.0+ds-8+b1	55,057.1 kB	467,544.0 kB	[文件列表]
arm64	3.3.0+ds-8+b1	10,182.6 kB	78,135.0 kB	[文件列表]
armel	3.3.0+ds-8+b1	10,208.3 kB	77,910.0 kB	[文件列表]
armhf	3.3.0+ds-8+b1	10,166.0 kB	75,854.0 kB	[文件列表]
i386	3.3.0+ds-8+b1	71,986.4 kB	627,347.0 kB	[文件列表]
mips64el	3.3.0+ds-8+b1	10,104.6 kB	79,713.0 kB	[文件列表]
ppc64el	3.3.0+ds-8+b1	10,358.5 kB	80,055.0 kB	[文件列表]
riscv64	3.3.0+ds-8+b2	10,372.0 kB	76,439.0 kB	[文件列表]