软件包：freecontact（1.0.21-14）

[ 源代码： freecontact  ]

fast protein contact predictor

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the command line tool freecontact(1).

其他与 freecontact 有关的软件包

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libc6 (>= 2.38)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libfreecontact0t64 (>= 1.0.21)

  fast protein contact predictor library

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, riscv64]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 14)

  GNU 标准 C++ 库，第3版

• dep: libxerces-c3.2t64

  validating XML parser library for C++

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

• sug: bash-completion

  bash shell 的可编程补全

• sug: hhsuite

  sensitive protein sequence searching based on HMM-HMM alignment

• sug: hmmer

  profile hidden Markov models for protein sequence analysis

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硬件架构	软件包大小	安装后大小	文件
amd64	372.1 kB	1,786.0 kB	[文件列表]
arm64	335.0 kB	1,826.0 kB	[文件列表]
armel	321.2 kB	1,625.0 kB	[文件列表]
armhf	325.4 kB	1,325.0 kB	[文件列表]
i386	381.4 kB	1,809.0 kB	[文件列表]
mips64el	352.7 kB	2,442.0 kB	[文件列表]
ppc64el	362.5 kB	2,082.0 kB	[文件列表]
riscv64	358.2 kB	1,510.0 kB	[文件列表]
s390x	345.7 kB	1,778.0 kB	[文件列表]