软件包：bowtie（1.3.1-3） [debports]
Ultrafast memory-efficient short read aligner
This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
其他与 bowtie 有关的软件包
|
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgcc-s1 (>= 3.4)
- GCC 支持库
-
- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: zlib1g (>= 1:1.2.6)
- 压缩库 - 运行时
-
- sug: bowtie-examples
- Examples for bowtie, the ultrafast memory-efficient short read aligner