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软件包:python3-pairtools(0.3.0-3.2 以及其他的) [debports]

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Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

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硬件架构 版本 软件包大小 安装后大小 文件
ppc64 (非官方移植版) 0.3.0-3.2+b2 146.6 kB752.0 kB [文件列表]