软件包：cufflinks（2.2.1+dfsg.1-10） [non-free]

[ 源代码： cufflinks  ]

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

This package provides the binary of cufflinks and associated tools, i.e. compress_gtf, cuffcompare, cuffdiff, cuffmerge, cuffnorm, cuffquant and gtf_to_sam.

标签: 生物学: 核酸, 领域: 生物学, field::biology:bioinformatics, implemented-in::c++, 角色: 程序, 处理: Biological Sequence

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• dep: libboost-serialization1.83.0 (>= 1.83.0)

  serialization library for C++

• dep: libboost-thread1.83.0 (>= 1.83.0)

  portable C++ multi-threading

• dep: libc6 (>= 2.38)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 4.0) [amd64, armel, armhf]

  GCC 支持库

  dep: libgcc-s1 (>= 4.1) [s390x]

  dep: libgcc-s1 (>= 4.2) [ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libstdc++6 (>= 14)

  GNU 标准 C++ 库，第3版

• dep: python3

  交互式高级面向对象语言（默认 python3 版本）

• dep: zlib1g (>= 1:1.2.3.3)

  压缩库 - 运行时

• rec: gffread

  GFF/GTF format conversions, region filtering, FASTA sequence extraction

• enh: tophat

  软件包暂时不可用

下载 cufflinks

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	1,552.7 kB	10,980.0 kB	[文件列表]
arm64	1,437.2 kB	10,662.0 kB	[文件列表]
armel	1,295.1 kB	9,713.0 kB	[文件列表]
armhf	1,167.7 kB	6,533.0 kB	[文件列表]
i386	1,576.6 kB	10,987.0 kB	[文件列表]
mips64el	1,605.5 kB	15,646.0 kB	[文件列表]
ppc64el	1,553.3 kB	13,734.0 kB	[文件列表]
riscv64	1,551.7 kB	8,570.0 kB	[文件列表]
s390x	1,494.6 kB	11,938.0 kB	[文件列表]