[ 源代码： murasaki ]
软件包：murasaki-mpi（1.68.6-8 以及其他的）
homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction
This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.
其他与 murasaki-mpi 有关的软件包
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- dep: libboost-filesystem1.67.0
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-iostreams1.67.0
- Boost.Iostreams Library
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- dep: libboost-regex1.67.0 (>= 1.67.0-10)
- regular expression library for C++
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- dep: libboost-system1.67.0
- Operating system (e.g. diagnostics support) library
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- dep: libc6 (>= 2.3.6-6~)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libcrypto++6
- General purpose cryptographic library - shared library
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- dep: libgcc1 (>= 1:4.2)
- GCC 支持库
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- dep: libopenmpi3
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 5.2)
- GNU 标准 C++ 库，第3版
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- dep: murasaki-common
- homology detection tool across multiple large genomes (common files)