软件包：maffilter（1.3.1+dfsg-1 以及其他的）

[ 源代码： maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

其他与 maffilter 有关的软件包

• dep: libboost-iostreams1.67.0

  Boost.Iostreams Library

• dep: libboost-regex1.67.0 (>= 1.67.0-10)

  regular expression library for C++

• dep: libbpp-core4

  Bio++ Core library

• dep: libbpp-phyl-omics3 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12

  Bio++ Phylogenetic library

• dep: libbpp-seq-omics3

  Bio++ Sequence library: genomics components

• dep: libbpp-seq12

  Bio++ Sequence library

• dep: libbz2-1.0

  高品质块排序文件压缩程序库 - 运行时库

• dep: libc6 (>= 2.1.3)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC 支持库

• dep: libstdc++6 (>= 5.2)

  GNU 标准 C++ 库，第3版

• dep: zlib1g (>= 1:1.1.4)

  压缩库 - 运行时

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

下载 maffilter

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
i386	1.3.1+dfsg-1+b1	213.4 kB	806.0 kB	[文件列表]