[ Source: maffilter ]
Package: maffilter (1.3.1+dfsg-1 and others)
Links for maffilter
Debian Resources:
Download Source Package maffilter:
- [maffilter_1.3.1+dfsg-1.dsc]
- [maffilter_1.3.1+dfsg.orig.tar.xz]
- [maffilter_1.3.1+dfsg-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [jydu.github.io]
Similar packages:
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
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Download maffilter
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
i386 | 1.3.1+dfsg-1+b1 | 213.4 kB | 806.0 kB | [list of files] |