软件包：clonalframe（1.2-10 以及其他的）

[ 源代码： clonalframe  ]

inference of bacterial microevolution using multilocus sequence data

ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance.

ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.

标签: 实做语言: C++, 角色: 程序

其他与 clonalframe 有关的软件包

• dep: libc6 (>= 2.14) [amd64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [除 amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

  GCC 支持库

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgsl25 (>= 2.6)

  GNU Scientific Library (GSL) -- library package

• dep: libstdc++6 (>= 5.2)

  GNU 标准 C++ 库，第3版

• sug: clonalframeml

  Efficient Inference of Recombination in Whole Bacterial Genomes

下载 clonalframe

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	1.2-10+b1	49.4 kB	136.0 kB	[文件列表]
arm64	1.2-10+b1	44.6 kB	120.0 kB	[文件列表]
armel	1.2-10+b1	42.7 kB	115.0 kB	[文件列表]
armhf	1.2-10+b1	41.5 kB	87.0 kB	[文件列表]
i386	1.2-10+b1	52.8 kB	131.0 kB	[文件列表]
mips64el	1.2-10+b1	54.1 kB	164.0 kB	[文件列表]
mipsel	1.2-10+b1	53.0 kB	150.0 kB	[文件列表]
ppc64el	1.2-10+b1	53.2 kB	152.0 kB	[文件列表]
s390x	1.2-10+b1	47.0 kB	136.0 kB	[文件列表]