[ bullseye ]
[ sid ]
[ 源代码： vg ]
软件包：vg（1.30.0+ds-1 以及其他的）
tools for working with genome variation graphs
variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:
- nodes, which are labeled by sequences and ids - edges, which connect two nodes via either of their respective ends - paths, describe genomes, sequence alignments, and annotations (such as gene models and transcripts) as walks through nodes connected by edges
This model is similar to a number of sequence graphs that have been used in assembly and multiple sequence alignment. Paths provide coordinate systems relative to genomes encoded in the graph, allowing stable mappings to be produced even if the structure of the graph is changed.
其他与 vg 有关的软件包
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- dep: libatomic1 (>= 4.8)
- 提供 __atomic 内置函数的支持库
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- dep: libboost-program-options1.74.0 (>= 1.74.0)
- program options library for C++
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- dep: libc6 (>= 2.29)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libcairo2 (>= 1.2.4)
- Cairo 2D vector graphics library
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- dep: libdivsufsort3 (>= 2.0.1)
- fast suffix array construction
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- dep: libdw1 (>= 0.126)
- library that provides access to the DWARF debug information
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- dep: libfastahack0 (>= 0.0+git20160702.bbc645f)
- library for indexing and sequence extraction from FASTA files (lib)
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- dep: libgcc-s1 (>= 4.2)
- GCC 支持库
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- dep: libgomp1 (>= 6)
- GCC OpenMP（GOMP）支持库
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjansson4 (>= 2.2)
- C library for encoding, decoding and manipulating JSON data
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- dep: libjemalloc2 (>= 5.0.0)
- general-purpose scalable concurrent malloc(3) implementation
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- dep: libraptor2-0 (>= 2.0.14)
- Raptor 2 RDF syntax library
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 9)
- GNU 标准 C++ 库，第3版
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- dep: libtabixpp0 (>= 1.0.0)
- C++ wrapper to tabix indexer
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- dep: libvcflib1 (>= 1.0.2+dfsg)
- C++ library for parsing and manipulating VCF files
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时