[ 源代码： pairtools ]
软件包：python3-pairtools（1.0.2-2 以及其他的）
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
其他与 python3-pairtools 有关的软件包
|
|
|
|
-
- dep: cython3
- C-Extensions for Python 3
-
- dep: libc6 (>= 2.4)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
-
- dep: libstdc++6 (>= 11)
- GNU 标准 C++ 库，第3版
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12)
- dep: python3 (>= 3.11~)
-
- dep: python3-bioframe
- library to enable flexible, scalable operations on genomic interval dataframes
-
- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
-
- dep: python3-numpy (>= 1:1.22.0)
- Fast array facility to the Python 3 language
-
- dep: python3-numpy-abi9
- 本虚包由这些包填实： python3-numpy
-
- dep: python3-pandas
- data structures for "relational" or "labeled" data
-
- dep: python3-pysam (>= 0.20.0+ds-3~)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-yaml
- YAML parser and emitter for Python3
-
- sug: python3-pairtools-examples (>= 1.0.2)
- Process sequencing data from a Hi-C experiment (examples)