Paket: python3-pairtools (1.0.2-2 och andra)

[ Källkod: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Andra paket besläktade med python3-pairtools

• dep: cython3

  C-Extensions for Python 3

• dep: libc6 (>= 2.4)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC stödbibliotek

• dep: libstdc++6 (>= 11)

  GNU standardbibliotek v3 för C++

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-bioframe

  library to enable flexible, scalable operations on genomic interval dataframes

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-numpy (>= 1:1.22.0)

  Fast array facility to the Python 3 language

• dep: python3-numpy-abi9

  virtuellt paket som tillhandahålls av python3-numpy

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam (>= 0.20.0+ds-3~)

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-yaml

  YAML parser and emitter for Python3

• sug: python3-pairtools-examples (>= 1.0.2)

  Process sequencing data from a Hi-C experiment (examples)

Hämta python3-pairtools

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
mipsel	1.0.2-2+b1	144,8 kbyte	702,0 kbyte	[filförteckning]