软件包：bowtie2（2.5.0-3 以及其他的）

[ 源代码： bowtie2  ]

ultrafast memory-efficient short read aligner

is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.

Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

标签: 生物学: 核酸, 领域: 生物学, field::biology:bioinformatics, implemented-in::c++, 用户接口: 命令行, 角色: role::program, use::comparing, 处理: Biological Sequence

其他与 bowtie2 有关的软件包

• dep: libc6 (>= 2.34)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 amd64]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [amd64]

• dep: libstdc++6 (>= 12)

  GNU 标准 C++ 库，第3版

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.6)

  压缩库 - 运行时

• sug: bowtie2-examples

  Examples for bowtie2

下载 bowtie2

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	2.5.0-3+b2	1,376.2 kB	5,512.0 kB	[文件列表]
arm64	2.5.0-3+b2	1,264.2 kB	4,930.0 kB	[文件列表]
mips64el	2.5.0-3+b2	1,376.2 kB	6,059.0 kB	[文件列表]
ppc64el	2.5.0-3+b2	1,427.4 kB	5,764.0 kB	[文件列表]