Пакунок: python3-presto (0.7.2-1)

[ Source: presto  ]

toolkit for processing B and T cell sequences (Python3 module)

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.

This package provides the presto Python3 module.

Інші пакунки пов'язані з python3-presto

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-packaging

  основні утиліти для пакунків python3

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-scipy

  scientific tools for Python 3

• dep: vsearch

  tool for processing metagenomic sequences

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