[ Source: ariba ]
Пакунок: ariba (2.14.7+ds-2 and others)
Links for ariba
Debian Resources:
Download Source Package ariba:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Sascha Steinbiss (QA Page)
- Étienne Mollier (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
Інші пакунки пов'язані з ariba
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq
- FASTA and FASTQ file manipulation tools
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- dep: libc6 (>= 2.4)
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
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- dep: libfml0 (>= 0.1)
- library for assembling Illumina short reads in small regions
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- dep: libgcc-s1 (>= 3.0)
- Допоміжна бібліотека GCC
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- dep: libminimap0 (>= 0.2)
- library for approximate mapping of long biosequences
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- dep: libstdc++6 (>= 13.1)
- Стандартна бібліотека C++ GNU, версії 3
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.13)
- dep: python3 (>= 3.12~)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-bs4 (>= 4.1.0)
- error-tolerant HTML parser for Python 3
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: python3-pymummer
- Python 3 interface to MUMmer
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
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- dep: zlib1g (>= 1:1.1.4)
- Бібліотека стискання даних (виконавчий модуль)
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- sug: spades
- genome assembler for single-cell and isolates data sets
Завантажити ariba
Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
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mips64el | 2.14.7+ds-2+b1 | 1,907.4 kB | 20,536.0 kB | [список файлів] |