[ Source: gubbins ]
Пакунок: gubbins (3.4-2 and others)
Links for gubbins
Debian Resources:
Download Source Package gubbins:
Maintainers:
External Resources:
- Homepage [sanger-pathogens.github.io]
Similar packages:
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
Інші пакунки пов'язані з gubbins
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- dep: fasttree [not amd64, i386]
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libc6 (>= 2.27) [riscv64]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.29) [m68k, ppc64]
- dep: libc6 (>= 2.34) [amd64, i386]
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- dep: libc6.1 (>= 2.29) [alpha]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6.1-udeb
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-multiprocess [amd64, i386]
- better multiprocessing and multithreading in Python
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- dep: python3-nose [not amd64, i386]
- Пакунок недоступний
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- dep: python3-numpy [amd64, i386]
- Python library for numerical computations (Python 3)
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- dep: python3-pkg-resources [amd64, i386]
- Виявлення пакунків та доступ до ресурсів використовуючи pkg_resources
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- dep: python3-reportlab [not amd64, i386]
- Бібліотека ReportLab для створення PDF-документів за допомогою Python3
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- dep: python3-scipy [amd64, i386]
- scientific tools for Python 3
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- dep: zlib1g (>= 1:1.1.4)
- Бібліотека стискання даних (виконавчий модуль)
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- rec: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- rec: iqtree
- efficient phylogenetic software by maximum likelihood
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- sug: r-base-core
- GNU R core of statistical computation and graphics system
Завантажити gubbins
| Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|---|
| alpha (unofficial port) | 2.3.5-1 | 53.5 kB | 201.0 kB | [список файлів] |
| amd64 | 3.4-2 | 93.0 kB | 483.0 kB | [список файлів] |
| i386 | 3.4-2 | 93.7 kB | 486.0 kB | [список файлів] |
| m68k (unofficial port) | 2.3.5-1 | 46.0 kB | 174.0 kB | [список файлів] |
| ppc64 (unofficial port) | 2.3.5-1 | 55.4 kB | 312.0 kB | [список файлів] |
| riscv64 (unofficial port) | 2.3.5-1 | 48.1 kB | 168.0 kB | [список файлів] |