Пакунок: cnvkit (0.9.10-3~0exp0)

[ Source: cnvkit  ]

Експериментальний пакунок

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

Copy number variant detection from targeted DNA sequencing

A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.

Інші пакунки пов'язані з cnvkit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python3-numpy

  Python library for numerical computations (Python 3)

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pomegranate

  Fast, flexible and easy to use probabilistic modelling

• dep: python3-pyfaidx

  efficient random access to fasta subsequences for Python 3

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-reportlab

  Бібліотека ReportLab для створення PDF-документів за допомогою Python3

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-sklearn

  Python modules for machine learning and data mining - Python 3

• dep: r-bioc-dnacopy (>= 1.78.0)

  R package: DNA copy number data analysis

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