Пакунок: iva (1.0.9+ds-11)
Links for iva
Debian Resources:
Download Source Package iva:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Andreas Tille (QA Page)
- Jorge Soares (QA Page)
- Sascha Steinbiss (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
iterative virus sequence assembler
IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth.
IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence.
Інші пакунки пов'язані з iva
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- dep: default-jre-headless
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- dep: fastaq (>= 1.6)
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- dep: kmc
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- dep: mummer
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- dep: python3-numpy
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: smalt
- Sequence Mapping and Alignment Tool
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- rec: bioperl
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- rec: r-base-core
- GNU R core of statistical computation and graphics system
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- rec: trimmomatic
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Завантажити iva
Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
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armhf | 8,377.6 kB | 8,765.0 kB | [список файлів] |