Пакунок: chromhmm (1.21+dfsg-1)
Links for chromhmm
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Download Source Package chromhmm:
Maintainers:
External Resources:
- Homepage [compbio.mit.edu]
Similar packages:
Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.
Інші пакунки пов'язані з chromhmm
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- dep: default-jre
- Standard Java or Java compatible Runtime
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- virtual package provided by default-jre, openjdk-11-jre, openjdk-17-jre
- or java8-runtime
- virtual package provided by default-jre, openjdk-11-jre, openjdk-17-jre
- or java9-runtime
- virtual package provided by default-jre, openjdk-11-jre, openjdk-17-jre
- or java10-runtime
- virtual package provided by default-jre, openjdk-11-jre, openjdk-17-jre
- or java11-runtime
- virtual package provided by default-jre, openjdk-11-jre, openjdk-17-jre
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- dep: libbatik-java
- xml.apache.org SVG Library
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- dep: libhtsjdk-java
- Java API for high-throughput sequencing data (HTS) formats
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- dep: libjheatchart-java
- Heat map charting library for Java
Завантажити chromhmm
Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
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all | 185.2 kB | 201.0 kB | [список файлів] |