Balík: chromhmm (1.21+dfsg-1)
Odkazy pre chromhmm
Zdroje Debian:
Stiahnuť zdrojový balík chromhmm:
Správcovia:
Externé zdroje:
- Domovská stránka [compbio.mit.edu]
Podobné balíky:
Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.
Ostatné balíky súvisiace s balíkom chromhmm
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- dep: default-jre
- štandardné dynamické prostredie Java alebo kompatibilné s Javou
- alebo java7-runtime
- virtuálny balík poskytovaný balíkom default-jre, openjdk-11-jre, openjdk-17-jre
- alebo java8-runtime
- virtuálny balík poskytovaný balíkom default-jre, openjdk-11-jre, openjdk-17-jre
- alebo java9-runtime
- virtuálny balík poskytovaný balíkom default-jre, openjdk-11-jre, openjdk-17-jre
- alebo java10-runtime
- virtuálny balík poskytovaný balíkom default-jre, openjdk-11-jre, openjdk-17-jre
- alebo java11-runtime
- virtuálny balík poskytovaný balíkom default-jre, openjdk-11-jre, openjdk-17-jre
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- dep: libbatik-java
- knižnica SVG xml.apache.org
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- dep: libhtsjdk-java
- Java API for high-throughput sequencing data (HTS) formats
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- dep: libjheatchart-java
- Heat map charting library for Java
Stiahnuť chromhmm
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
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all | 185.2 kB | 201.0 kB | [zoznam súborov] |