Пакунок: plasmidid (1.6.5+dfsg-2)

[ Source: plasmidid  ]

mapping-based, assembly-assisted plasmid identification tool

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

PlasmidID is a computational pipeline that maps Illumina reads over plasmid database sequences. The k-mer filtered, most covered sequences are clustered by identity to avoid redundancy and the longest are used as scaffold for plasmid reconstruction. Reads are assembled and annotated by automatic and specific annotation. All information generated from mapping, assembly, annotation and local alignment analyses is gathered and accurately represented in a circular image which allow user to determine plasmidic composition in any bacterial sample.

Інші пакунки пов'язані з plasmidid

• dep: bedtools

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• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: cd-hit

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• dep: circos

  Графобудівник для візуалізації даних

• dep: mash

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• dep: ncbi-blast+

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• dep: prokka

  rapid annotation of prokaryotic genomes

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-numpy

  Швидкі методи для роботи з числовими масивами для мови Python 3

• rec: python3-pandas

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• rec: spades

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• rec: trimmomatic

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Архітектура	Розмір пакунка	Розмір після встановлення	Файли
amd64	46.1 kB	331.0 kB	[список файлів]