Пакунок: r-bioc-biomart (2.54.0+dfsg-1)

[ Source: r-bioc-biomart  ]

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

In recent years a wealth of biological data has become available in public data repositories. Easy access to these valuable data resources and firm integration with data analysis is needed for comprehensive bioinformatics data analysis. biomaRt provides an interface to a growing collection of databases implementing the BioMart software suite (http://www.biomart.org). The package enables retrieval of large amounts of data in a uniform way without the need to know the underlying database schemas or write complex SQL queries. Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt users direct access to a diverse set of data and enable a wide range of powerful online queries from gene annotation to database mining.

Інші пакунки пов'язані з r-bioc-biomart

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.16

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biocfilecache

  GNU R management of files across sessions

• dep: r-cran-digest

  GNU R package for 'hash digest' of R data structures

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-progress

  GNU R terminal progress bars

• dep: r-cran-rappdirs

  GNU R application directories

• dep: r-cran-stringr

  Make it easier to work with strings

• dep: r-cran-xml (>= 3.99-0.7)

  GNU R package for XML parsing and generation

• dep: r-cran-xml2

  GNU R XML parser

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-mockery

  mocking library for GNU R

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

• sug: r-cran-webmockr

  GNU R stubbing and setting expectations on 'HTTP' requests

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