Package: umis (1.0.9-1)

[ Source: umis  ]

tools for processing UMI RNA-tag data

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process.

 1. Formatting reads
 2. Filtering noisy cellular barcodes
 3. Pseudo-mapping to cDNAs
 4. Counting molecular identifiers

Other Packages Related to umis

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.4) [not arm64, ppc64el]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-regex

  alternative regular expression module (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-toolz

  List processing tools and functional utilities

• sug: umis-examples

  tools for processing UMI RNA-tag data (examples)

Download umis

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	25.8 kB	116.0 kB	[list of files]
arm64	25.4 kB	156.0 kB	[list of files]
armel	26.3 kB	111.0 kB	[list of files]
armhf	24.9 kB	103.0 kB	[list of files]
i386	26.4 kB	115.0 kB	[list of files]
mips64el	25.7 kB	157.0 kB	[list of files]
ppc64el	26.4 kB	156.0 kB	[list of files]