Pakket: umis (1.0.9-1 en anderen)

[ Bron: umis  ]

tools for processing UMI RNA-tag data

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process.

 1. Formatting reads
 2. Filtering noisy cellular barcodes
 3. Pseudo-mapping to cDNAs
 4. Counting molecular identifiers

Andere aan umis gerelateerde pakketten

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [niet arm64, ppc64el, riscv64]

• dep: python3

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  dep: python3 (<< 3.13)

  dep: python3 (>= 3.12~)

• dep: python3-click

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• dep: python3-pandas

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• dep: python3-pysam

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• dep: python3-regex

  alternative regular expression module (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-toolz

  List processing tools and functional utilities

• sug: umis-examples

  tools for processing UMI RNA-tag data (examples)

umis downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.0.9-1+b1	31,5 kB	134,0 kB	[overzicht]
arm64	1.0.9-1+b1	30,5 kB	158,0 kB	[overzicht]
armel	1.0.9-1+b1	30,8 kB	124,0 kB	[overzicht]
armhf	1.0.9-1+b1	29,6 kB	117,0 kB	[overzicht]
i386	1.0.9-1+b1	32,4 kB	133,0 kB	[overzicht]
mips64el	1.0.9-1+b1	30,6 kB	160,0 kB	[overzicht]
ppc64el	1.0.9-1+b1	32,3 kB	158,0 kB	[overzicht]
riscv64	1.0.9-1+b2	30,8 kB	122,0 kB	[overzicht]