Paket: r-cran-spp (1.16.0-2 ve diğerleri)

[ Kaynak: r-cran-spp  ]

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

r-cran-spp ile İlgili Diğer Paketler

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.29) [arm64, riscv64 değil]

  dep: libc6 (>= 2.38) [arm64]

• dep: libgcc-s1 (>= 3.0) [riscv64 değil]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [riscv64]

• dep: libstdc++6 (>= 13.1) [arm64, riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [arm64, riscv64 değil]

• dep: r-api-4.0

  sanal paketi sağlayan r-base-core

• dep: r-base-core (>= 4.0.2-1) [arm64, riscv64 değil]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-cran-bh (>= 1.66)

  (Virtual) GNU R package to provide BH

• dep: r-cran-catools

  GNU R package providing various utility functions

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

r-cran-spp indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	1.16.0-2	315,3 kB	453,0 kB	[dosya listesi]
arm64	1.16.0-2+b1	315,1 kB	436,0 kB	[dosya listesi]
mips64el	1.16.0-2	308,7 kB	452,0 kB	[dosya listesi]
ppc64el	1.16.0-2	317,2 kB	497,0 kB	[dosya listesi]
riscv64	1.16.0-2+b1	312,3 kB	401,0 kB	[dosya listesi]
s390x	1.16.0-2	311,0 kB	444,0 kB	[dosya listesi]