Paket: python3-sqt (0.8.0-8 ve diğerleri)
python3-sqt için bağlantılar
Debian Kaynakları:
- Hata Raporları
- Developer Information
- Debian Değişim Günlüğü
- Telif Hakkı Dosyası
- Debian Yama Takipçisi
python-sqt Kaynak Paketini İndir:
Geliştiriciler:
Dış Kaynaklar:
- Ana Sayfa [bitbucket.org]
Benzer paketler:
SeQuencing Tools for biological DNA/RNA high-throughput data
sqt is a collection of command-line tools for working with high-throughput sequencing data. Conceptionally not fixed to use any particular language, many sqt subcommands are currently implemented in Python. For them, a Python package is available with functions for reading and writing FASTA/FASTQ files, computing alignments, quality trimming, etc.
The following tools are offered:
* sqt-coverage -- Compute per-reference statistics such as coverage and GC content * sqt-fastqmod -- FASTQ modifications: shorten, subset, reverse complement, quality trimming. * sqt-fastastats -- Compute N50, min/max length, GC content etc. of a FASTA file * sqt-qualityguess -- Guess quality encoding of one or more FASTA files. * sqt-globalalign -- Compute a global or semiglobal alignment of two strings. * sqt-chars -- Count length of the first word given on the command line. * sqt-sam-cscq -- Add the CS and CQ tags to a SAM file with colorspace reads. * sqt-fastamutate -- Add substitutions and indels to sequences in a FASTA file. * sqt-fastaextract -- Efficiently extract one or more regions from an indexed FASTA file. * sqt-translate -- Replace characters in FASTA files (like the 'tr' command). * sqt-sam-fixn -- Replace all non-ACGT characters within reads in a SAM file. * sqt-sam-insertsize -- Mean and standard deviation of paired-end insert sizes. * sqt-sam-set-op -- Set operations (union, intersection, ...) on SAM/BAM files. * sqt-bam-eof -- Check for the End-Of-File marker in compressed BAM files. * sqt-checkfastqpe -- Check whether two FASTQ files contain correctly paired paired-end data.
python3-sqt ile İlgili Diğer Paketler
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.4) [armel, armhf, i386, mips64el]
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.13)
- dep: python3 (>= 3.12~)
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- dep: python3-cutadapt
- Clean biological sequences from high-throughput sequencing reads (Python 3)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-seaborn
- statistical visualization library for Python3
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- dep: python3-xopen
- Python3 module to open compressed files transparently
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- rec: fonts-noto-color-emoji
- color emoji font from Google
python3-sqt indir
Mimari | Sürüm | Paket Boyutu | Kurulu Boyut | Dosyalar |
---|---|---|---|---|
amd64 | 0.8.0-8+b1 | 128,6 kB | 423,0 kB | [dosya listesi] |
arm64 | 0.8.0-8+b1 | 118,0 kB | 411,0 kB | [dosya listesi] |
armel | 0.8.0-8+b1 | 118,2 kB | 404,0 kB | [dosya listesi] |
armhf | 0.8.0-8+b1 | 118,1 kB | 352,0 kB | [dosya listesi] |
i386 | 0.8.0-8+b1 | 130,3 kB | 437,0 kB | [dosya listesi] |
mips64el | 0.8.0-8+b1 | 117,1 kB | 483,0 kB | [dosya listesi] |
ppc64el | 0.8.0-8+b1 | 130,8 kB | 475,0 kB | [dosya listesi] |
riscv64 | 0.8.0-8+b1 | 126,9 kB | 383,0 kB | [dosya listesi] |