Paket: r-bioc-oligo (1.70.0+ds-2)

[ Kaynak: r-bioc-oligo  ]

Preprocessing tools for oligonucleotide arrays

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

r-bioc-oligo ile İlgili Diğer Paketler

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: r-api-4.0

  sanal paketi sağlayan r-base-core

• dep: r-api-bioc-3.20

  sanal paketi sağlayan r-bioc-biocgenerics

• dep: r-bioc-affxparser (>= 1.39.4)

  Affymetrix File Parsing SDK

• dep: r-bioc-affyio (>= 1.35.0)

  BioConductor tools for parsing Affymetrix data files

• dep: r-bioc-biobase (>= 2.27.3)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.13.11)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.35.12)

  GNU R string objects representing biological sequences

• dep: r-bioc-oligoclasses (>= 1.29.6)

  Classes for high-throughput arrays supported by oligo and crlmm

• dep: r-bioc-preprocesscore (>= 1.29.0)

  BioConductor collection of pre-processing functions

• dep: r-bioc-zlibbioc

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-dbi (>= 0.3.1)

  GNU R package providing a generic database interface

• dep: r-cran-ff

  Memory-Efficient Fast-Access Storage of Large Data

• dep: r-cran-rsqlite (>= 1.0.0)

  Database Interface R driver for SQLite

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-genefilter

  methods for filtering genes from microarray experiments

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• sug: r-cran-rcurl

  GNU R General network (HTTP/FTP/...) client interface

• sug: r-cran-runit

  GNU R package providing unit testing framework

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Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
mips64el	897,0 kB	1.356,0 kB	[dosya listesi]