Paket: miniasm (0.3+dfsg-4)

[ Kaynak: miniasm  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Etiketler: Biyoloji: Nükleik Asitler, Alan: Biyoloji, field::biology:bioinformatics, implemented-in::c, Kullanıcı Arayüzü: Komut Satırı, Rol: role::program, science::calculation, Amaç: Hesaplama, use::comparing, works-with::biological-sequence

miniasm ile İlgili Diğer Paketler

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

miniasm indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
i386	31,2 kB	78,0 kB	[dosya listesi]