Kaynak Paket: bioperl-run (1.7.2-4)
bioperl-run için bağlantılar
Debian Kaynakları:
Geliştiriciler:
Dış Kaynaklar:
bioperl-run ile İlgili Diğer Paketler
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- bağımsız inşa bağımlılıkları
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- adep:
debhelper
(>= 11~)
- helper programs for debian/rules
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- idep:
perl
- Larry Wall's Practical Extraction and Report Language
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- idep:
libmodule-build-perl
- framework for building and installing Perl modules
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- idep:
bioperl
- Perl tools for computational molecular biology
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- idep:
libalgorithm-diff-perl
- module to find differences between files
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- idep:
libipc-run-perl
- Perl module for running processes
-
- idep:
libio-string-perl
- Emulate IO::File interface for in-core strings
-
- idep:
libxml-twig-perl
- Perl module for processing huge XML documents in tree mode
-
- idep:
libtest-most-perl
- Perl module with the most commonly needed test functions and features
-
- idep:
libarray-compare-perl
- Perl module to easily compare arrays
-
- idep:
libtree-dagnode-perl
- Perl (super)class for representing nodes in a tree
-
- idep:
amap-align
- Protein multiple alignment by sequence annealing
-
- idep:
bedtools
- suite of utilities for comparing genomic features
-
- idep:
blast2
- transitional dummy package to ncbi-blast+-legacy
-
- idep:
bowtie
- Ultrafast memory-efficient short read aligner
-
- idep:
bwa
- Burrows-Wheeler Aligner
-
- idep:
clustalw
- global multiple nucleotide or peptide sequence alignment
-
- idep:
emboss
- European molecular biology open software suite
-
- idep:
exonerate
- generic tool for pairwise sequence comparison
-
- idep:
hmmer
- profile hidden Markov models for protein sequence analysis
-
- idep:
hyphy-mpi
- Hypothesis testing using Phylogenies (MPI version)
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- idep:
infernal
- inference of RNA secondary structural alignments
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- idep:
kalign
- Global and progressive multiple sequence alignment
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- idep:
maq
- maps short fixed-length polymorphic DNA sequence reads to reference sequences
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- idep:
mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- idep:
muscle
- Multiple alignment program of protein sequences
-
- idep:
ncoils
- coiled coil secondary structure prediction
-
- idep:
phylip
- package of programs for inferring phylogenies
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- idep:
phyml
- Phylogenetic estimation using Maximum Likelihood
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- idep:
primer3
- tool to design flanking oligo nucleotides for DNA amplification
-
- idep:
probcons
- PROBabilistic CONSistency-based multiple sequence alignment
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- idep:
raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- idep:
samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- idep:
sim4
- tool for aligning cDNA and genomic DNA
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- idep:
t-coffee
- Multiple Sequence Alignment
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- idep:
tigr-glimmer
- Gene detection in archea and bacteria
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- idep:
wise
- comparison of biopolymers, like DNA and protein sequences
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- idep:
libwww-perl
- simple and consistent interface to the world-wide web
