Paket: mindthegap (2.3.0-4)

[ Kaynak: mindthegap  ]

performs detection and assembly of DNA insertion variants in NGS read datasets

Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. It takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gaps between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file.

mindthegap ile İlgili Diğer Paketler

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgatbcore3 (>= 1.4.2+dfsg-7)

  dynamic library of the Genome Analysis Toolbox

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libhdf5-103-1t64

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

mindthegap indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
ppc64el	238,5 kB	1.177,0 kB	[dosya listesi]