Paket: fasttree (2.1.11-2) [debports]
fasttree için bağlantılar
Debian Kaynakları:
Kaynak Paketini İndir:
BulunamadıGeliştiriciler:
Dış Kaynaklar:
- Ana Sayfa [www.microbesonline.org]
Benzer paketler:
phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.
FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").
This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).
fasttree ile İlgili Diğer Paketler
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
fasttree indir
Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
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ppc64 (resmi olmayan port) | 181,7 kB | 635,0 kB | [dosya listesi] |