Paket: umis (1.0.9-1) [debports]

[ Kaynak:  ]

tools for processing UMI RNA-tag data

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process.

 1. Formatting reads
 2. Filtering noisy cellular barcodes
 3. Pseudo-mapping to cDNAs
 4. Counting molecular identifiers

umis ile İlgili Diğer Paketler

• dep: libc6.1 (>= 2.36)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-regex

  alternative regular expression module (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-toolz

  List processing tools and functional utilities

• sug: umis-examples

  tools for processing UMI RNA-tag data (examples)

umis indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
ia64 (resmi olmayan port)	28,3 kB	124,0 kB	[dosya listesi]