Paket: clonalframeml (1.13-1 ve diğerleri)

[ Kaynak: clonalframeml  ]

Efficient Inference of Recombination in Whole Bacterial Genomes

ClonalFrameML is a software package that performs efficient inference of recombination in bacterial genomes. ClonalFrameML was created by Xavier Didelot and Daniel Wilson. ClonalFrameML can be applied to any type of aligned sequence data, but is especially aimed at analysis of whole genome sequences. It is able to compare hundreds of whole genomes in a matter of hours on a standard Desktop computer. There are three main outputs from a run of ClonalFrameML: a phylogeny with branch lengths corrected to account for recombination, an estimation of the key parameters of the recombination process, and a genomic map of where recombination took place for each branch of the phylogeny.

ClonalFrameML is a maximum likelihood implementation of the Bayesian software ClonalFrame which was previously described by Didelot and Falush (2007). The recombination model underpinning ClonalFrameML is exactly the same as for ClonalFrame, but this new implementation is a lot faster, is able to deal with much larger genomic dataset, and does not suffer from MCMC convergence issues

clonalframeml ile İlgili Diğer Paketler

• dep: libc6 (>= 2.34) [alpha, ia64, loong64, sh4 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.37) [loong64, sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [armel, armhf, hppa, ia64, m68k, sh4 değil]

  GCC support library

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

clonalframeml indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	1.13-1	95,5 kB	344,0 kB	[dosya listesi]
amd64	1.13-1	103,9 kB	283,0 kB	[dosya listesi]
arm64	1.13-1+b1	95,2 kB	280,0 kB	[dosya listesi]
armel	1.13-1	90,4 kB	254,0 kB	[dosya listesi]
armhf	1.13-1	86,3 kB	182,0 kB	[dosya listesi]
hppa (resmi olmayan port)	1.13-1	97,9 kB	252,0 kB	[dosya listesi]
i386	1.13-1	103,4 kB	286,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	1.13-1	126,4 kB	545,0 kB	[dosya listesi]
loong64 (resmi olmayan port)	1.13-1	91,7 kB	263,0 kB	[dosya listesi]
m68k (resmi olmayan port)	1.13-1	92,9 kB	262,0 kB	[dosya listesi]
mips64el	1.13-1	94,0 kB	349,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	1.13-1	100,4 kB	343,0 kB	[dosya listesi]
ppc64el	1.13-1	103,3 kB	343,0 kB	[dosya listesi]
riscv64	1.13-1	98,2 kB	207,0 kB	[dosya listesi]
s390x	1.13-1	103,4 kB	283,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	1.13-1	126,3 kB	278,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	1.13-1	86,3 kB	1.050,0 kB	[dosya listesi]
x32 (resmi olmayan port)	1.13-1	108,1 kB	286,0 kB	[dosya listesi]